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Gene : AT5G28210 A. thaliana

Gene ID  ? AT5G28210
Brief Description  mRNA capping enzyme family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? mRNA capping enzyme family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5'-phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, mRNA processing, dephosphorylation, mRNA capping; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), mRNA capping enzyme (InterPro:IPR001339), mRNA capping enzyme, bifunctional (InterPro:IPR017074), Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), mRNA capping enzyme, C-terminal (InterPro:IPR013846); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT5G01290.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G28210 0.5kb upstream 0.5kb upstream 2378   true Chr5: 10188086-10190463
AT5G28210 0.5kb upstream 0.5kb upstream 500   false Chr5: 10188086-10188585
AT5G28210 0.5kb downstream 0.5kb downstream 2378   true Chr5: 10188586-10190963
AT5G28210 0.5kb downstream 0.5kb downstream 500   false Chr5: 10190464-10190963
AT5G28210 1.0kb upstream 1.0kb upstream 2878   true Chr5: 10187586-10190463
AT5G28210 1.0kb upstream 1.0kb upstream 1000   false Chr5: 10187586-10188585
AT5G28210 1.0kb downstream 1.0kb downstream 2878   true Chr5: 10188586-10191463
AT5G28210 1.0kb downstream 1.0kb downstream 1000   false Chr5: 10190464-10191463
AT5G28210 3.0kb upstream 3.0kb upstream 4878   true Chr5: 10185586-10190463
AT5G28210 3.0kb upstream 3.0kb upstream 3000   false Chr5: 10185586-10188585
AT5G28210 3.0kb downstream 3.0kb downstream 4878   true Chr5: 10188586-10193463
AT5G28210 3.0kb downstream 3.0kb downstream 3000   false Chr5: 10190464-10193463

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway

Gene --> Ontology term

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Expression

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Interactions

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0