help  | faq  | software  | ARAPORT

Gene : PP2A-4 A. thaliana

Gene ID  ? AT3G58500
Brief Description  protein phosphatase 2A-4  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? protein phosphatase 2A-4 (PP2A-4); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-3 (TAIR:AT2G42500.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].  Source: TAIR, Jun 30, 2015.
Name  ? protein phosphatase 2A-4

Locus History Displayer

Publication Counts Displayer

1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
PP2A-C3 and PP2A-C4, have redundant functions in controlling embryo patterning and root development, processes that depend on auxin fluxes. 23167545

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G58500 0.5kb upstream 0.5kb upstream 4475   true Chr3: 21635162-21639636
AT3G58500 0.5kb upstream 0.5kb upstream 500   false Chr3: 21639137-21639636
AT3G58500 0.5kb downstream 0.5kb downstream 4475   true Chr3: 21634662-21639136
AT3G58500 0.5kb downstream 0.5kb downstream 500   false Chr3: 21634662-21635161
AT3G58500 1.0kb upstream 1.0kb upstream 4975   true Chr3: 21635162-21640136
AT3G58500 1.0kb upstream 1.0kb upstream 1000   false Chr3: 21639137-21640136
AT3G58500 1.0kb downstream 1.0kb downstream 4975   true Chr3: 21634162-21639136
AT3G58500 1.0kb downstream 1.0kb downstream 1000   false Chr3: 21634162-21635161
AT3G58500 3.0kb upstream 3.0kb upstream 6975   true Chr3: 21635162-21642136
AT3G58500 3.0kb upstream 3.0kb upstream 3000   false Chr3: 21639137-21642136
AT3G58500 3.0kb downstream 3.0kb downstream 6975   true Chr3: 21632162-21639136
AT3G58500 3.0kb downstream 3.0kb downstream 3000   false Chr3: 21632162-21635161

Proteins

Protein Displayer


Function

Gene Ontology Displayer

1 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139