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Gene : AT3G56320 A. thaliana

Gene ID  ? AT3G56320
Brief Description  PAP/OAS1 substrate-binding domain superfamily  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? PAP/OAS1 substrate-binding domain superfamily; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT2G40520.4).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G56320 0.5kb upstream 0.5kb upstream 4709   true Chr3: 20885894-20890602
AT3G56320 0.5kb upstream 0.5kb upstream 500   false Chr3: 20890103-20890602
AT3G56320 0.5kb downstream 0.5kb downstream 4709   true Chr3: 20885394-20890102
AT3G56320 0.5kb downstream 0.5kb downstream 500   false Chr3: 20885394-20885893
AT3G56320 1.0kb upstream 1.0kb upstream 5209   true Chr3: 20885894-20891102
AT3G56320 1.0kb upstream 1.0kb upstream 1000   false Chr3: 20890103-20891102
AT3G56320 1.0kb downstream 1.0kb downstream 5209   true Chr3: 20884894-20890102
AT3G56320 1.0kb downstream 1.0kb downstream 1000   false Chr3: 20884894-20885893
AT3G56320 3.0kb upstream 3.0kb upstream 7209   true Chr3: 20885894-20893102
AT3G56320 3.0kb upstream 3.0kb upstream 3000   false Chr3: 20890103-20893102
AT3G56320 3.0kb downstream 3.0kb downstream 7209   true Chr3: 20882894-20890102
AT3G56320 3.0kb downstream 3.0kb downstream 3000   false Chr3: 20882894-20885893

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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139