help  | faq  | software  | ARAPORT

Gene : AT3G49200 A. thaliana

Gene ID  ? AT3G49200
Brief Description  O-acyltransferase (WSD1-like) family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? O-acyltransferase (WSD1-like) family protein; CONTAINS InterPro DOMAIN/s: O-acyltransferase, WSD1, C-terminal (InterPro:IPR009721), O-acyltransferase, WSD1, N-terminal (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: O-acyltransferase (WSD1-like) family protein (TAIR:AT3G49210.1).  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G49200 0.5kb upstream 0.5kb upstream 2878   true Chr3: 18235269-18238146
AT3G49200 0.5kb upstream 0.5kb upstream 500   false Chr3: 18237647-18238146
AT3G49200 0.5kb downstream 0.5kb downstream 2878   true Chr3: 18234769-18237646
AT3G49200 0.5kb downstream 0.5kb downstream 500   false Chr3: 18234769-18235268
AT3G49200 1.0kb upstream 1.0kb upstream 3378   true Chr3: 18235269-18238646
AT3G49200 1.0kb upstream 1.0kb upstream 1000   false Chr3: 18237647-18238646
AT3G49200 1.0kb downstream 1.0kb downstream 3378   true Chr3: 18234269-18237646
AT3G49200 1.0kb downstream 1.0kb downstream 1000   false Chr3: 18234269-18235268
AT3G49200 3.0kb upstream 3.0kb upstream 5378   true Chr3: 18235269-18240646
AT3G49200 3.0kb upstream 3.0kb upstream 3000   false Chr3: 18237647-18240646
AT3G49200 3.0kb downstream 3.0kb downstream 5378   true Chr3: 18232269-18237646
AT3G49200 3.0kb downstream 3.0kb downstream 3000   false Chr3: 18232269-18235268

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0