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Gene : AT3G46020 A. thaliana

Gene ID  ? AT3G46020
Brief Description  RNA-binding (RRM/RBD/RNP motifs) family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G59860.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G46020 0.5kb upstream 0.5kb upstream 1566   true Chr3: 16912285-16913850
AT3G46020 0.5kb upstream 0.5kb upstream 500   false Chr3: 16913351-16913850
AT3G46020 0.5kb downstream 0.5kb downstream 1566   true Chr3: 16911785-16913350
AT3G46020 0.5kb downstream 0.5kb downstream 500   false Chr3: 16911785-16912284
AT3G46020 1.0kb upstream 1.0kb upstream 2066   true Chr3: 16912285-16914350
AT3G46020 1.0kb upstream 1.0kb upstream 1000   false Chr3: 16913351-16914350
AT3G46020 1.0kb downstream 1.0kb downstream 2066   true Chr3: 16911285-16913350
AT3G46020 1.0kb downstream 1.0kb downstream 1000   false Chr3: 16911285-16912284
AT3G46020 3.0kb upstream 3.0kb upstream 4066   true Chr3: 16912285-16916350
AT3G46020 3.0kb upstream 3.0kb upstream 3000   false Chr3: 16913351-16916350
AT3G46020 3.0kb downstream 3.0kb downstream 4066   true Chr3: 16909285-16913350
AT3G46020 3.0kb downstream 3.0kb downstream 3000   false Chr3: 16909285-16912284

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0 Pathways

Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07