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Gene : AT4G25550 A. thaliana

Gene ID  ? AT4G25550
Brief Description  Cleavage/polyadenylation specificity factor, 25kDa subunit  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Cleavage/polyadenylation specificity factor, 25kDa subunit; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, 25kDa subunit (InterPro:IPR016706); BEST Arabidopsis thaliana protein match is: homolog of CFIM-25 (TAIR:AT4G29820.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G25550 0.5kb upstream 0.5kb upstream 3407   true Chr4: 13047867-13051273
AT4G25550 0.5kb upstream 0.5kb upstream 500   false Chr4: 13047867-13048366
AT4G25550 0.5kb downstream 0.5kb downstream 3407   true Chr4: 13048367-13051773
AT4G25550 0.5kb downstream 0.5kb downstream 500   false Chr4: 13051274-13051773
AT4G25550 1.0kb upstream 1.0kb upstream 3907   true Chr4: 13047367-13051273
AT4G25550 1.0kb upstream 1.0kb upstream 1000   false Chr4: 13047367-13048366
AT4G25550 1.0kb downstream 1.0kb downstream 3907   true Chr4: 13048367-13052273
AT4G25550 1.0kb downstream 1.0kb downstream 1000   false Chr4: 13051274-13052273
AT4G25550 3.0kb upstream 3.0kb upstream 5907   true Chr4: 13045367-13051273
AT4G25550 3.0kb upstream 3.0kb upstream 3000   false Chr4: 13045367-13048366
AT4G25550 3.0kb downstream 3.0kb downstream 5907   true Chr4: 13048367-13054273
AT4G25550 3.0kb downstream 3.0kb downstream 3000   false Chr4: 13051274-13054273

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway

Gene --> Ontology term

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Expression

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Interactions

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139