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Gene : CYP81F3 A. thaliana

Gene ID  ? AT4G37400
Brief Description  cytochrome P450, family 81, subfamily F, polypeptide 3  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? cytochrome P450, family 81, subfamily F, polypeptide 3" (CYP81F3); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: stem, leaf whorl, root, leaf, stamen; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 81, subfamily F, polypeptide 4 (TAIR:AT4G37410.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of CYP81F  Source: TAIR, Jun 30, 2015.
Name  ? cytochrome P450, family 81, subfamily F, polypeptide 3

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G37400 0.5kb upstream 0.5kb upstream 2951   true Chr4: 17583492-17586442
AT4G37400 0.5kb upstream 0.5kb upstream 500   false Chr4: 17583492-17583991
AT4G37400 0.5kb downstream 0.5kb downstream 2951   true Chr4: 17583992-17586942
AT4G37400 0.5kb downstream 0.5kb downstream 500   false Chr4: 17586443-17586942
AT4G37400 1.0kb upstream 1.0kb upstream 3451   true Chr4: 17582992-17586442
AT4G37400 1.0kb upstream 1.0kb upstream 1000   false Chr4: 17582992-17583991
AT4G37400 1.0kb downstream 1.0kb downstream 3451   true Chr4: 17583992-17587442
AT4G37400 1.0kb downstream 1.0kb downstream 1000   false Chr4: 17586443-17587442
AT4G37400 3.0kb upstream 3.0kb upstream 5451   true Chr4: 17580992-17586442
AT4G37400 3.0kb upstream 3.0kb upstream 3000   false Chr4: 17580992-17583991
AT4G37400 3.0kb downstream 3.0kb downstream 5451   true Chr4: 17583992-17589442
AT4G37400 3.0kb downstream 3.0kb downstream 3000   false Chr4: 17586443-17589442

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4 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00903 Limonene and pinene degradation
00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0