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Gene : SRP2 A. thaliana

Gene ID  ? AT2G14540
Brief Description  serpin 2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? serpin 2 (SRP2); FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: DNA repair, response to DNA damage stimulus; LOCATED IN: nucleus; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: Serine protease inhibitor (SERPIN) family protein (TAIR:AT1G62170.1).  Source: TAIR, Jun 30, 2015.
Name  ? serpin 2
  • synonyms:
  • ATSRP2

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Expression of serpins AtSRP2 and AtSRP3 is required for normal responses of plants following exposure to alkylating genotoxins. 19426562

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G14540 0.5kb upstream 0.5kb upstream 2244   true Chr2: 6197663-6199906
AT2G14540 0.5kb upstream 0.5kb upstream 500   false Chr2: 6199407-6199906
AT2G14540 0.5kb downstream 0.5kb downstream 2244   true Chr2: 6197163-6199406
AT2G14540 0.5kb downstream 0.5kb downstream 500   false Chr2: 6197163-6197662
AT2G14540 1.0kb upstream 1.0kb upstream 2744   true Chr2: 6197663-6200406
AT2G14540 1.0kb upstream 1.0kb upstream 1000   false Chr2: 6199407-6200406
AT2G14540 1.0kb downstream 1.0kb downstream 2744   true Chr2: 6196663-6199406
AT2G14540 1.0kb downstream 1.0kb downstream 1000   false Chr2: 6196663-6197662
AT2G14540 3.0kb upstream 3.0kb upstream 4744   true Chr2: 6197663-6202406
AT2G14540 3.0kb upstream 3.0kb upstream 3000   false Chr2: 6199407-6202406
AT2G14540 3.0kb downstream 3.0kb downstream 4744   true Chr2: 6194663-6199406
AT2G14540 3.0kb downstream 3.0kb downstream 3000   false Chr2: 6194663-6197662

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Homology

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from RefGenome GO annotations assigned by RefGenome 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016