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Gene : KCS1 A. thaliana

Gene ID  ? AT1G01120
Brief Description  3-ketoacyl-CoA synthase 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? 3-ketoacyl-CoA synthase 1 (KCS1); FUNCTIONS IN: fatty acid elongase activity, acyltransferase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosolic ribosome, endoplasmic reticulum, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 11 (TAIR:AT2G26640.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.  Source: TAIR, Jun 30, 2015.
Name  ? 3-ketoacyl-CoA synthase 1

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G01120 0.5kb upstream 0.5kb upstream 2552   true Chr1: 57164-59715
AT1G01120 0.5kb upstream 0.5kb upstream 500   false Chr1: 59216-59715
AT1G01120 0.5kb downstream 0.5kb downstream 2552   true Chr1: 56664-59215
AT1G01120 0.5kb downstream 0.5kb downstream 500   false Chr1: 56664-57163
AT1G01120 1.0kb upstream 1.0kb upstream 3052   true Chr1: 57164-60215
AT1G01120 1.0kb upstream 1.0kb upstream 1000   false Chr1: 59216-60215
AT1G01120 1.0kb downstream 1.0kb downstream 3052   true Chr1: 56164-59215
AT1G01120 1.0kb downstream 1.0kb downstream 1000   false Chr1: 56164-57163
AT1G01120 3.0kb upstream 3.0kb upstream 5052   true Chr1: 57164-62215
AT1G01120 3.0kb upstream 3.0kb upstream 3000   false Chr1: 59216-62215
AT1G01120 3.0kb downstream 3.0kb downstream 5052   true Chr1: 54164-59215
AT1G01120 3.0kb downstream 3.0kb downstream 3000   false Chr1: 54164-57163

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3 Pathways

Data Source: KEGG

Identifier Name
01110 Biosynthesis of secondary metabolites
04626 Plant-pathogen interaction
00062 Fatty acid elongation

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139