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Gene : SR45a A. thaliana

Gene ID  ? AT1G07350
Brief Description  RNA-binding (RRM/RBD/RNP motifs) family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G35785.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a serine/arginine rich-like protein, SR45a. Involved in the regulation of stress-responsive alternative splicing.  Source: TAIR, Jun 30, 2015.
Name  ? serine/arginine rich-like protein 45a

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
atSR45a is involved in the regulation of alternative splicing, which may serve as part of the response to high-light stress. [atSR45a] 21862516

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G07350 0.5kb upstream 0.5kb upstream 3304   true Chr1: 2257384-2260687
AT1G07350 0.5kb upstream 0.5kb upstream 500   false Chr1: 2260188-2260687
AT1G07350 0.5kb downstream 0.5kb downstream 3304   true Chr1: 2256884-2260187
AT1G07350 0.5kb downstream 0.5kb downstream 500   false Chr1: 2256884-2257383
AT1G07350 1.0kb upstream 1.0kb upstream 3804   true Chr1: 2257384-2261187
AT1G07350 1.0kb upstream 1.0kb upstream 1000   false Chr1: 2260188-2261187
AT1G07350 1.0kb downstream 1.0kb downstream 3804   true Chr1: 2256384-2260187
AT1G07350 1.0kb downstream 1.0kb downstream 1000   false Chr1: 2256384-2257383
AT1G07350 3.0kb upstream 3.0kb upstream 5804   true Chr1: 2257384-2263187
AT1G07350 3.0kb upstream 3.0kb upstream 3000   false Chr1: 2260188-2263187
AT1G07350 3.0kb downstream 3.0kb downstream 5804   true Chr1: 2254384-2260187
AT1G07350 3.0kb downstream 3.0kb downstream 3000   false Chr1: 2254384-2257383

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0 Pathways

Data Source: KEGG

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139