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Gene : AT1G17230 A. thaliana

Gene ID  ? AT1G17230
Brief Description  Leucine-rich receptor-like protein kinase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G63930.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G17230 0.5kb upstream 0.5kb upstream 5026   true Chr1: 5890116-5895141
AT1G17230 0.5kb upstream 0.5kb upstream 500   false Chr1: 5890116-5890615
AT1G17230 0.5kb downstream 0.5kb downstream 5026   true Chr1: 5890616-5895641
AT1G17230 0.5kb downstream 0.5kb downstream 500   false Chr1: 5895142-5895641
AT1G17230 1.0kb upstream 1.0kb upstream 5526   true Chr1: 5889616-5895141
AT1G17230 1.0kb upstream 1.0kb upstream 1000   false Chr1: 5889616-5890615
AT1G17230 1.0kb downstream 1.0kb downstream 5526   true Chr1: 5890616-5896141
AT1G17230 1.0kb downstream 1.0kb downstream 1000   false Chr1: 5895142-5896141
AT1G17230 3.0kb upstream 3.0kb upstream 7526   true Chr1: 5887616-5895141
AT1G17230 3.0kb upstream 3.0kb upstream 3000   false Chr1: 5887616-5890615
AT1G17230 3.0kb downstream 3.0kb downstream 7526   true Chr1: 5890616-5898141
AT1G17230 3.0kb downstream 3.0kb downstream 3000   false Chr1: 5895142-5898141

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0