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Gene : OGG1 A. thaliana

Gene ID  ? AT1G21710
Brief Description  8-oxoguanine-DNA glycosylase 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? 8-oxoguanine-DNA glycosylase 1 (OGG1); FUNCTIONS IN: oxidized purine base lesion DNA N-glycosylase activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294), 8-oxoguanine DNA glycosylase, N-terminal (InterPro:IPR012904), HhH-GPD domain (InterPro:IPR003265).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes 8-oxoguanine-DNA glycosylase. DNA repair enzyme.  Source: TAIR, Jun 30, 2015.
Name  ? 8-oxoguanine-DNA glycosylase 1
  • synonyms:
  • ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1,
  • ATOGG1

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Overexpression of OGG1 enhances seed longevity and abiotic stress tolerance. 22473985
Arabidopsis cells use both FPG and OGG1 to repair 8-oxoG in a pathway that requires ZDP and ARP in downstream steps. 24934622

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G21710 0.5kb upstream 0.5kb upstream 2319   true Chr1: 7623820-7626138
AT1G21710 0.5kb upstream 0.5kb upstream 500   false Chr1: 7623820-7624319
AT1G21710 0.5kb downstream 0.5kb downstream 2319   true Chr1: 7624320-7626638
AT1G21710 0.5kb downstream 0.5kb downstream 500   false Chr1: 7626139-7626638
AT1G21710 1.0kb upstream 1.0kb upstream 2819   true Chr1: 7623320-7626138
AT1G21710 1.0kb upstream 1.0kb upstream 1000   false Chr1: 7623320-7624319
AT1G21710 1.0kb downstream 1.0kb downstream 2819   true Chr1: 7624320-7627138
AT1G21710 1.0kb downstream 1.0kb downstream 1000   false Chr1: 7626139-7627138
AT1G21710 3.0kb upstream 3.0kb upstream 4819   true Chr1: 7621320-7626138
AT1G21710 3.0kb upstream 3.0kb upstream 3000   false Chr1: 7621320-7624319
AT1G21710 3.0kb downstream 3.0kb downstream 4819   true Chr1: 7624320-7629138
AT1G21710 3.0kb downstream 3.0kb downstream 3000   false Chr1: 7626139-7629138

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
03410 Base excision repair

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Gene --> Pathways


Expression

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Interactions

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Homology

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Stocks

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Other

10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016