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Gene : UGD1 A. thaliana

Gene ID  ? AT1G26570
Brief Description  UDP-glucose dehydrogenase 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? UDP-glucose dehydrogenase 1 (UGD1); FUNCTIONS IN: in 7 functions; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase family protein (TAIR:AT3G29360.2).  Source: TAIR, Jun 30, 2015.
Name  ? UDP-glucose dehydrogenase 1
  • synonyms:
  • UDP-GLUCOSE DEHYDROGENASE 1,
  • ATUGD1

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G26570 0.5kb upstream 0.5kb upstream 2886   true Chr1: 9181508-9184393
AT1G26570 0.5kb upstream 0.5kb upstream 500   false Chr1: 9181508-9182007
AT1G26570 0.5kb downstream 0.5kb downstream 2886   true Chr1: 9182008-9184893
AT1G26570 0.5kb downstream 0.5kb downstream 500   false Chr1: 9184394-9184893
AT1G26570 1.0kb upstream 1.0kb upstream 3386   true Chr1: 9181008-9184393
AT1G26570 1.0kb upstream 1.0kb upstream 1000   false Chr1: 9181008-9182007
AT1G26570 1.0kb downstream 1.0kb downstream 3386   true Chr1: 9182008-9185393
AT1G26570 1.0kb downstream 1.0kb downstream 1000   false Chr1: 9184394-9185393
AT1G26570 3.0kb upstream 3.0kb upstream 5386   true Chr1: 9179008-9184393
AT1G26570 3.0kb upstream 3.0kb upstream 3000   false Chr1: 9179008-9182007
AT1G26570 3.0kb downstream 3.0kb downstream 5386   true Chr1: 9182008-9187393
AT1G26570 3.0kb downstream 3.0kb downstream 3000   false Chr1: 9184394-9187393

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5 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00520 Amino sugar and nucleotide sugar metabolism
00500 Starch and sucrose metabolism
00040 Pentose and glucuronate interconversions
00053 Ascorbate and aldarate metabolism

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139