help  | faq  | software  | ARAPORT

Gene : RLP7 A. thaliana

Gene ID  ? AT1G47890
Brief Description  receptor like protein 7  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? receptor like protein 7 (RLP7); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 6 (TAIR:AT1G45616.1).  Source: TAIR, Jun 30, 2015.
Name  ? receptor like protein 7
  • synonyms:
  • AtRLP7,
  • receptor like protein 7

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G47890 0.5kb upstream 0.5kb upstream 3632   true Chr1: 17643476-17647107
AT1G47890 0.5kb upstream 0.5kb upstream 500   false Chr1: 17643476-17643975
AT1G47890 0.5kb downstream 0.5kb downstream 3632   true Chr1: 17643976-17647607
AT1G47890 0.5kb downstream 0.5kb downstream 500   false Chr1: 17647108-17647607
AT1G47890 1.0kb upstream 1.0kb upstream 4132   true Chr1: 17642976-17647107
AT1G47890 1.0kb upstream 1.0kb upstream 1000   false Chr1: 17642976-17643975
AT1G47890 1.0kb downstream 1.0kb downstream 4132   true Chr1: 17643976-17648107
AT1G47890 1.0kb downstream 1.0kb downstream 1000   false Chr1: 17647108-17648107
AT1G47890 3.0kb upstream 3.0kb upstream 6132   true Chr1: 17640976-17647107
AT1G47890 3.0kb upstream 3.0kb upstream 3000   false Chr1: 17640976-17643975
AT1G47890 3.0kb downstream 3.0kb downstream 6132   true Chr1: 17643976-17650107
AT1G47890 3.0kb downstream 3.0kb downstream 3000   false Chr1: 17647108-17650107

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0