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Gene : OCT5 A. thaliana

Gene ID  ? AT1G79410
Brief Description  organic cation/carnitine transporter5  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? organic cation/carnitine transporter5 (5-Oct); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter 6 (TAIR:AT1G16370.1).  Source: TAIR, Jun 30, 2015.
Name  ? organic cation/carnitine transporter5
  • synonyms:
  • organic cation/carnitine transporter5,
  • AtOCT5

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G79410 0.5kb upstream 0.5kb upstream 2431   true Chr1: 29867854-29870284
AT1G79410 0.5kb upstream 0.5kb upstream 500   false Chr1: 29869785-29870284
AT1G79410 0.5kb downstream 0.5kb downstream 2431   true Chr1: 29867354-29869784
AT1G79410 0.5kb downstream 0.5kb downstream 500   false Chr1: 29867354-29867853
AT1G79410 1.0kb upstream 1.0kb upstream 2931   true Chr1: 29867854-29870784
AT1G79410 1.0kb upstream 1.0kb upstream 1000   false Chr1: 29869785-29870784
AT1G79410 1.0kb downstream 1.0kb downstream 2931   true Chr1: 29866854-29869784
AT1G79410 1.0kb downstream 1.0kb downstream 1000   false Chr1: 29866854-29867853
AT1G79410 3.0kb upstream 3.0kb upstream 4931   true Chr1: 29867854-29872784
AT1G79410 3.0kb upstream 3.0kb upstream 3000   false Chr1: 29869785-29872784
AT1G79410 3.0kb downstream 3.0kb downstream 4931   true Chr1: 29864854-29869784
AT1G79410 3.0kb downstream 3.0kb downstream 3000   false Chr1: 29864854-29867853

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0