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Gene : RTL1 A. thaliana

Gene ID  ? AT1G80650
Brief Description  RNAse THREE-like protein 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RNAse THREE-like protein 1 (RTL1); FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: Double-stranded RNA-binding domain (DsRBD)-containing protein (TAIR:AT4G00420.1).  Source: TAIR, Jun 30, 2015.
Name  ? RNAse THREE-like protein 1

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Data suggest plant RNA viruses (Carmovirus, Tobamovirus, Cucumovirus, Tymovirus) specifically induce expression of RTL1. 26696443

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G80650 0.5kb upstream 0.5kb upstream 2010   true Chr1: 30313993-30316002
AT1G80650 0.5kb upstream 0.5kb upstream 500   false Chr1: 30313993-30314492
AT1G80650 0.5kb downstream 0.5kb downstream 2010   true Chr1: 30314493-30316502
AT1G80650 0.5kb downstream 0.5kb downstream 500   false Chr1: 30316003-30316502
AT1G80650 1.0kb upstream 1.0kb upstream 2510   true Chr1: 30313493-30316002
AT1G80650 1.0kb upstream 1.0kb upstream 1000   false Chr1: 30313493-30314492
AT1G80650 1.0kb downstream 1.0kb downstream 2510   true Chr1: 30314493-30317002
AT1G80650 1.0kb downstream 1.0kb downstream 1000   false Chr1: 30316003-30317002
AT1G80650 3.0kb upstream 3.0kb upstream 4510   true Chr1: 30311493-30316002
AT1G80650 3.0kb upstream 3.0kb upstream 3000   false Chr1: 30311493-30314492
AT1G80650 3.0kb downstream 3.0kb downstream 4510   true Chr1: 30314493-30319002
AT1G80650 3.0kb downstream 3.0kb downstream 3000   false Chr1: 30316003-30319002

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Interactions

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Homology

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139