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Gene : CYP71B6 A. thaliana

Gene ID  ? AT2G24180
Brief Description  cytochrome p450 71b6  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? cytochrome p450 71b6 (CYP71B6); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 37 (TAIR:AT3G26330.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a cytochrome P450 monooxygenase that converts indole-3-acetonitrile to indole-3-aldehyde / indole-3-carboxylic acid and cyanide.  Source: TAIR, Jun 30, 2015.
Name  ? cytochrome p450 71b6

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G24180 0.5kb upstream 0.5kb upstream 2518   true Chr2: 10281218-10283735
AT2G24180 0.5kb upstream 0.5kb upstream 500   false Chr2: 10281218-10281717
AT2G24180 0.5kb downstream 0.5kb downstream 2518   true Chr2: 10281718-10284235
AT2G24180 0.5kb downstream 0.5kb downstream 500   false Chr2: 10283736-10284235
AT2G24180 1.0kb upstream 1.0kb upstream 3018   true Chr2: 10280718-10283735
AT2G24180 1.0kb upstream 1.0kb upstream 1000   false Chr2: 10280718-10281717
AT2G24180 1.0kb downstream 1.0kb downstream 3018   true Chr2: 10281718-10284735
AT2G24180 1.0kb downstream 1.0kb downstream 1000   false Chr2: 10283736-10284735
AT2G24180 3.0kb upstream 3.0kb upstream 5018   true Chr2: 10278718-10283735
AT2G24180 3.0kb upstream 3.0kb upstream 3000   false Chr2: 10278718-10281717
AT2G24180 3.0kb downstream 3.0kb downstream 5018   true Chr2: 10281718-10286735
AT2G24180 3.0kb downstream 3.0kb downstream 3000   false Chr2: 10283736-10286735

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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139