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Gene : BCE2 A. thaliana

Gene ID  ? AT3G06850
Brief Description  2-oxoacid dehydrogenases acyltransferase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? BCE2; FUNCTIONS IN: acetyltransferase activity, dihydrolipoamide branched chain acyltransferase activity, alpha-ketoacid dehydrogenase activity, zinc ion binding; INVOLVED IN: response to light stimulus, response to sucrose stimulus; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089), Lipoamide Acyltransferase (InterPro:IPR015761); BEST Arabidopsis thaliana protein match is: Dihydrolipoamide acetyltransferase, long form protein (TAIR:AT1G54220.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? dihydrolipoamide branched chain acyltransferase  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G06850 0.5kb upstream 0.5kb upstream 3262   true Chr3: 2157908-2161169
AT3G06850 0.5kb upstream 0.5kb upstream 500   false Chr3: 2160670-2161169
AT3G06850 0.5kb downstream 0.5kb downstream 3262   true Chr3: 2157408-2160669
AT3G06850 0.5kb downstream 0.5kb downstream 500   false Chr3: 2157408-2157907
AT3G06850 1.0kb upstream 1.0kb upstream 3762   true Chr3: 2157908-2161669
AT3G06850 1.0kb upstream 1.0kb upstream 1000   false Chr3: 2160670-2161669
AT3G06850 1.0kb downstream 1.0kb downstream 3762   true Chr3: 2156908-2160669
AT3G06850 1.0kb downstream 1.0kb downstream 1000   false Chr3: 2156908-2157907
AT3G06850 3.0kb upstream 3.0kb upstream 5762   true Chr3: 2157908-2163669
AT3G06850 3.0kb upstream 3.0kb upstream 3000   false Chr3: 2160670-2163669
AT3G06850 3.0kb downstream 3.0kb downstream 5762   true Chr3: 2154908-2160669
AT3G06850 3.0kb downstream 3.0kb downstream 3000   false Chr3: 2154908-2157907

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4 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00280 Valine, leucine and isoleucine degradation
00640 Propanoate metabolism

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0