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Gene : AT3G11630 A. thaliana

Gene ID  ? AT3G11630
Brief Description  Thioredoxin superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Thioredoxin superfamily protein; FUNCTIONS IN: peroxiredoxin activity, antioxidant activity; INVOLVED IN: response to cold, defense response to bacterium; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) that contains two catalytic Cys residues.  Source: TAIR, Jun 30, 2015.

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3 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
BAS1 and SOB7 act redundantly with respect to light promotion of cotyledon expansion, repression of hypocotyl elongation and flowering time in addition to other phenotypes not regulated by light. 15773851
interaction of chloroplast 2-Cys peroxiredoxin with NADPH-thioredoxin reductase C (NTRC) and thioredoxin x 25448674
Substitution of Cys for Ser at amino acid location 150 of the alpha-helix of 2-Cys Prx A regulates/enhances the dual peroxidase and chaperone enzymatic functions. [2-cysteine peroxiredoxin A] 26141131

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G11630 0.5kb upstream 0.5kb upstream 2624   true Chr3: 3671536-3674159
AT3G11630 0.5kb upstream 0.5kb upstream 500   false Chr3: 3671536-3672035
AT3G11630 0.5kb downstream 0.5kb downstream 2624   true Chr3: 3672036-3674659
AT3G11630 0.5kb downstream 0.5kb downstream 500   false Chr3: 3674160-3674659
AT3G11630 1.0kb upstream 1.0kb upstream 3124   true Chr3: 3671036-3674159
AT3G11630 1.0kb upstream 1.0kb upstream 1000   false Chr3: 3671036-3672035
AT3G11630 1.0kb downstream 1.0kb downstream 3124   true Chr3: 3672036-3675159
AT3G11630 1.0kb downstream 1.0kb downstream 1000   false Chr3: 3674160-3675159
AT3G11630 3.0kb upstream 3.0kb upstream 5124   true Chr3: 3669036-3674159
AT3G11630 3.0kb upstream 3.0kb upstream 3000   false Chr3: 3669036-3672035
AT3G11630 3.0kb downstream 3.0kb downstream 5124   true Chr3: 3672036-3677159
AT3G11630 3.0kb downstream 3.0kb downstream 3000   false Chr3: 3674160-3677159

Proteins

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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139