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Gene : ERF4 A. thaliana

Gene ID  ? AT3G15210
Brief Description  ethylene responsive element binding factor 4  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ethylene responsive element binding factor 4 (ERF4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response factor 8 (TAIR:AT1G53170.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation.  Source: TAIR, Jun 30, 2015.
Name  ? ethylene responsive element binding factor 4
  • synonyms:
  • ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4,
  • RAP2.5,
  • ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4,
  • ATERF-4,
  • RELATED TO AP2 5,
  • ATERF4

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AtERF4 domains bind to a target DNA motif with a universal CG step core recognition and different flanking bases preference 19878300
AtERF4 and AtERF8 regulated the expression of many genes involved in the progression of leaf senescence. 23629833

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G15210 0.5kb upstream 0.5kb upstream 1760   true Chr3: 5120803-5122562
AT3G15210 0.5kb upstream 0.5kb upstream 500   false Chr3: 5120803-5121302
AT3G15210 0.5kb downstream 0.5kb downstream 1760   true Chr3: 5121303-5123062
AT3G15210 0.5kb downstream 0.5kb downstream 500   false Chr3: 5122563-5123062
AT3G15210 1.0kb upstream 1.0kb upstream 2260   true Chr3: 5120303-5122562
AT3G15210 1.0kb upstream 1.0kb upstream 1000   false Chr3: 5120303-5121302
AT3G15210 1.0kb downstream 1.0kb downstream 2260   true Chr3: 5121303-5123562
AT3G15210 1.0kb downstream 1.0kb downstream 1000   false Chr3: 5122563-5123562
AT3G15210 3.0kb upstream 3.0kb upstream 4260   true Chr3: 5118303-5122562
AT3G15210 3.0kb upstream 3.0kb upstream 3000   false Chr3: 5118303-5121302
AT3G15210 3.0kb downstream 3.0kb downstream 4260   true Chr3: 5121303-5125562
AT3G15210 3.0kb downstream 3.0kb downstream 3000   false Chr3: 5122563-5125562

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0 Pathways

Data Source: KEGG

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139