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Gene : ATM1 A. thaliana

Gene ID  ? AT3G19960
Brief Description  myosin 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? myosin 1 (ATM1); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: plasma membrane, myosin complex, cell plate, phragmoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G50360.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of Myosin-like proteins  Source: TAIR, Jun 30, 2015.
Name  ? myosin 1

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Data indicate that class VIII myosin, ATM1, has low enzymatic activity and high affinity for actin and is primarily localized at the cell cortex. 24637024

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G19960 0.5kb upstream 0.5kb upstream 9453   true Chr3: 6948274-6957726
AT3G19960 0.5kb upstream 0.5kb upstream 500   false Chr3: 6948274-6948773
AT3G19960 0.5kb downstream 0.5kb downstream 9453   true Chr3: 6948774-6958226
AT3G19960 0.5kb downstream 0.5kb downstream 500   false Chr3: 6957727-6958226
AT3G19960 1.0kb upstream 1.0kb upstream 9953   true Chr3: 6947774-6957726
AT3G19960 1.0kb upstream 1.0kb upstream 1000   false Chr3: 6947774-6948773
AT3G19960 1.0kb downstream 1.0kb downstream 9953   true Chr3: 6948774-6958726
AT3G19960 1.0kb downstream 1.0kb downstream 1000   false Chr3: 6957727-6958726
AT3G19960 3.0kb upstream 3.0kb upstream 11953   true Chr3: 6945774-6957726
AT3G19960 3.0kb upstream 3.0kb upstream 3000   false Chr3: 6945774-6948773
AT3G19960 3.0kb downstream 3.0kb downstream 11953   true Chr3: 6948774-6960726
AT3G19960 3.0kb downstream 3.0kb downstream 3000   false Chr3: 6957727-6960726

Proteins

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Function

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Interactions

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Homology

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139