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Gene : ERF1 A. thaliana

Gene ID  ? AT3G23240
Brief Description  ethylene response factor 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ethylene response factor 1 (ERF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding factor 15 (TAIR:AT2G31230.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. EREBP like protein that binds GCC box of ethylene regulated promoters such as basic chitinases. Constitutive expression of ERF1 phenocopies ethylene over production. Involved in ethylene signaling cascade,downstream of EIN2 and EIN3.  Source: TAIR, Jun 30, 2015.
Name  ? ethylene response factor 1
  • synonyms:
  • ERF1B,
  • AtERF#092

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5 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
High- and medium-affinity binding sites are over-represented in promoters of MYC2- or ERF1-regulated genes, and therefore they may represent new cis-regulatory elements. 21284757
ERF1 plays a positive role in salt, drought, and heat stress tolerance by stress-specific gene regulation, which integrates jasmonic acid, ethylene, and abscisic acid signals. 23719892
Expression of several ethylene biosynthetic genes and ethylene-responsive factors, including ERF1 and ERF2, was induced during reoxygenation. 24506560
Results provide evidence that AtERF1 is important for regulating AtNudt7 during oxidative signaling. 25451743
Using loss- and gain-of-function transgenic lines as well as biochemical analysis, we demonstrate that ERF1 can directly up-regulate ASA1 by binding to its promoter, leading to auxin accumulation and ethylene-induced inhibition of root growth. 26745809

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G23240 0.5kb upstream 0.5kb upstream 1488   true Chr3: 8295117-8296604
AT3G23240 0.5kb upstream 0.5kb upstream 500   false Chr3: 8295117-8295616
AT3G23240 0.5kb downstream 0.5kb downstream 1488   true Chr3: 8295617-8297104
AT3G23240 0.5kb downstream 0.5kb downstream 500   false Chr3: 8296605-8297104
AT3G23240 1.0kb upstream 1.0kb upstream 1988   true Chr3: 8294617-8296604
AT3G23240 1.0kb upstream 1.0kb upstream 1000   false Chr3: 8294617-8295616
AT3G23240 1.0kb downstream 1.0kb downstream 1988   true Chr3: 8295617-8297604
AT3G23240 1.0kb downstream 1.0kb downstream 1000   false Chr3: 8296605-8297604
AT3G23240 3.0kb upstream 3.0kb upstream 3988   true Chr3: 8292617-8296604
AT3G23240 3.0kb upstream 3.0kb upstream 3000   false Chr3: 8292617-8295616
AT3G23240 3.0kb downstream 3.0kb downstream 3988   true Chr3: 8295617-8299604
AT3G23240 3.0kb downstream 3.0kb downstream 3000   false Chr3: 8296605-8299604

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04075 Plant hormone signal transduction

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139