help  | faq  | software  | ARAPORT

Gene : FSD1 A. thaliana

Gene ID  ? AT4G25100
Brief Description  Fe superoxide dismutase 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Fe superoxide dismutase 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Fe-superoxide dismutase  Source: TAIR, Jun 30, 2015.
Name  ? Fe superoxide dismutase 1
  • synonyms:
  • ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1,
  • ATFSD1

Locus History Displayer

Publication Counts Displayer

5 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
While for roots, based on an increase in FSD1 gene expression, oxidative stress was suggested to be superoxide induced... 20822913
CPN20 silencing decreases iron superoxide dismutases activity in chloroplast. 23057508
Data suggest that iron superoxide dismutase gene FSD1 and SPL7 transcriptional regulator SPL7 may associate withi copper homeostasis. 23455955
Data indicate that cadmium (Cd) elicits SPL7-dependent copper (Cu) deficiency responses by altering expression of COPT1, COPT2, COPT6, CSD1, CSD2, miRNA398 b/c precursors and FSD1. 23835944
Overexpression of MKK5 in wild-type plants enhanced their tolerance to salt treatments. Another kinase, MPK6, was also involved in the MKK5-mediated iron superoxide dismutase (FSD) signalling pathway in salt stress. 26136265

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G25100 0.5kb upstream 0.5kb upstream 3212   true Chr4: 12884300-12887511
AT4G25100 0.5kb upstream 0.5kb upstream 500   false Chr4: 12887012-12887511
AT4G25100 0.5kb downstream 0.5kb downstream 3212   true Chr4: 12883800-12887011
AT4G25100 0.5kb downstream 0.5kb downstream 500   false Chr4: 12883800-12884299
AT4G25100 1.0kb upstream 1.0kb upstream 3712   true Chr4: 12884300-12888011
AT4G25100 1.0kb upstream 1.0kb upstream 1000   false Chr4: 12887012-12888011
AT4G25100 1.0kb downstream 1.0kb downstream 3712   true Chr4: 12883300-12887011
AT4G25100 1.0kb downstream 1.0kb downstream 1000   false Chr4: 12883300-12884299
AT4G25100 3.0kb upstream 3.0kb upstream 5712   true Chr4: 12884300-12890011
AT4G25100 3.0kb upstream 3.0kb upstream 3000   false Chr4: 12887012-12890011
AT4G25100 3.0kb downstream 3.0kb downstream 5712   true Chr4: 12881300-12887011
AT4G25100 3.0kb downstream 3.0kb downstream 3000   false Chr4: 12881300-12884299

Proteins

Protein Displayer


Function

Gene Ontology Displayer

1 Pathways

Data Source: KEGG

Identifier Name
04146 Peroxisome

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139