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Gene : BRU6 A. thaliana

Gene ID  ? AT4G37390
Brief Description  Auxin-responsive GH3 family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? BRU6; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G59500.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. May function as a negative component in auxin signaling by regulating auxin activity.  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G37390 0.5kb upstream 0.5kb upstream 2905   true Chr4: 17579118-17582022
AT4G37390 0.5kb upstream 0.5kb upstream 500   false Chr4: 17579118-17579617
AT4G37390 0.5kb downstream 0.5kb downstream 2905   true Chr4: 17579618-17582522
AT4G37390 0.5kb downstream 0.5kb downstream 500   false Chr4: 17582023-17582522
AT4G37390 1.0kb upstream 1.0kb upstream 3405   true Chr4: 17578618-17582022
AT4G37390 1.0kb upstream 1.0kb upstream 1000   false Chr4: 17578618-17579617
AT4G37390 1.0kb downstream 1.0kb downstream 3405   true Chr4: 17579618-17583022
AT4G37390 1.0kb downstream 1.0kb downstream 1000   false Chr4: 17582023-17583022
AT4G37390 3.0kb upstream 3.0kb upstream 5405   true Chr4: 17576618-17582022
AT4G37390 3.0kb upstream 3.0kb upstream 3000   false Chr4: 17576618-17579617
AT4G37390 3.0kb downstream 3.0kb downstream 5405   true Chr4: 17579618-17585022
AT4G37390 3.0kb downstream 3.0kb downstream 3000   false Chr4: 17582023-17585022

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04075 Plant hormone signal transduction

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0