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Gene : CYP71B11 A. thaliana
Gene ID  ? AT5G25120
Brief Description  cytochrome p450, family 71, subfamily B, polypeptide 11  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ytochrome p450, family 71, subfamily B, polypeptide 11" (CYP71B11); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: plasma membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 12 (TAIR:AT5G25130.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? putative cytochrome P450  Source: TAIR, Jun 30, 2015.
Name  ? ytochrome p450, family 71, subfamily B, polypeptide 11
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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G25120 0.5kb upstream 0.5kb upstream 3212   true Chr5: 8661470-8664681
AT5G25120 0.5kb upstream 0.5kb upstream 500   false Chr5: 8661470-8661969
AT5G25120 0.5kb downstream 0.5kb downstream 3212   true Chr5: 8661970-8665181
AT5G25120 0.5kb downstream 0.5kb downstream 500   false Chr5: 8664682-8665181
AT5G25120 1.0kb upstream 1.0kb upstream 3712   true Chr5: 8660970-8664681
AT5G25120 1.0kb upstream 1.0kb upstream 1000   false Chr5: 8660970-8661969
AT5G25120 1.0kb downstream 1.0kb downstream 3712   true Chr5: 8661970-8665681
AT5G25120 1.0kb downstream 1.0kb downstream 1000   false Chr5: 8664682-8665681
AT5G25120 3.0kb upstream 3.0kb upstream 5712   true Chr5: 8658970-8664681
AT5G25120 3.0kb upstream 3.0kb upstream 3000   false Chr5: 8658970-8661969
AT5G25120 3.0kb downstream 3.0kb downstream 5712   true Chr5: 8661970-8667681
AT5G25120 3.0kb downstream 3.0kb downstream 3000   false Chr5: 8664682-8667681

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4 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00903 Limonene and pinene degradation
00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
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