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Gene : CSN6A A. thaliana

Gene ID  ? AT5G56280
Brief Description  COP9 signalosome subunit 6A  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? COP9 signalosome subunit 6A (CSN6A); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9 signalosome subunit 6B (TAIR:AT4G26430.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? one of two genes encoding subunit 6 of COP9 signalosome complex. Protein contains a MPR1p and PAD1p N-terminal (MPN) domain at the N-terminal region and belongs to the Mov34 superfamily. Mutant and antisense expression result in a number of developmental defects and in ubiquitin/proteasome-mediated protein degradation.  Source: TAIR, Jun 30, 2015.
Name  ? COP9 signalosome subunit 6A

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Results indicate that although CSN6A and CSN6B retain mostly redundant functions, CSN5A and CSN5B play unequal roles in the regulation of plant development. 17307927


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G56280 0.5kb upstream 0.5kb upstream 2722   true Chr5: 22783384-22786105
AT5G56280 0.5kb upstream 0.5kb upstream 500   false Chr5: 22785606-22786105
AT5G56280 0.5kb downstream 0.5kb downstream 2722   true Chr5: 22782884-22785605
AT5G56280 0.5kb downstream 0.5kb downstream 500   false Chr5: 22782884-22783383
AT5G56280 1.0kb upstream 1.0kb upstream 3222   true Chr5: 22783384-22786605
AT5G56280 1.0kb upstream 1.0kb upstream 1000   false Chr5: 22785606-22786605
AT5G56280 1.0kb downstream 1.0kb downstream 3222   true Chr5: 22782384-22785605
AT5G56280 1.0kb downstream 1.0kb downstream 1000   false Chr5: 22782384-22783383
AT5G56280 3.0kb upstream 3.0kb upstream 5222   true Chr5: 22783384-22788605
AT5G56280 3.0kb upstream 3.0kb upstream 3000   false Chr5: 22785606-22788605
AT5G56280 3.0kb downstream 3.0kb downstream 5222   true Chr5: 22780384-22785605
AT5G56280 3.0kb downstream 3.0kb downstream 3000   false Chr5: 22780384-22783383


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0 Pathways

Data Source: KEGG

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Array Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139