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Gene : CYP81F2 A. thaliana

Gene ID  ? AT5G57220
Brief Description  cytochrome P450, family 81, subfamily F, polypeptide 2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? cytochrome P450, family 81, subfamily F, polypeptide 2" (CYP81F2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: in 7 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 81, subfamily F, polypeptide 3 (TAIR:AT4G37400.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of CYP81F, involved in glucosinolate metabolism. Mutants had impaired resistance to fungi.  Source: TAIR, Jun 30, 2015.
Name  ? cytochrome P450, family 81, subfamily F, polypeptide 2

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
study identifed CYP81F2 as the gene underlying Indole Glucosinolate Modifier1 (IGM1), a metabolic QTL for accumulation of 2 modified indole glucosinolates; also CYP81F2 contributes to defense against green peach aphid 19293369

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G57220 0.5kb upstream 0.5kb upstream 2563   true Chr5: 23187340-23189902
AT5G57220 0.5kb upstream 0.5kb upstream 500   false Chr5: 23187340-23187839
AT5G57220 0.5kb downstream 0.5kb downstream 2563   true Chr5: 23187840-23190402
AT5G57220 0.5kb downstream 0.5kb downstream 500   false Chr5: 23189903-23190402
AT5G57220 1.0kb upstream 1.0kb upstream 3063   true Chr5: 23186840-23189902
AT5G57220 1.0kb upstream 1.0kb upstream 1000   false Chr5: 23186840-23187839
AT5G57220 1.0kb downstream 1.0kb downstream 3063   true Chr5: 23187840-23190902
AT5G57220 1.0kb downstream 1.0kb downstream 1000   false Chr5: 23189903-23190902
AT5G57220 3.0kb upstream 3.0kb upstream 5063   true Chr5: 23184840-23189902
AT5G57220 3.0kb upstream 3.0kb upstream 3000   false Chr5: 23184840-23187839
AT5G57220 3.0kb downstream 3.0kb downstream 5063   true Chr5: 23187840-23192902
AT5G57220 3.0kb downstream 3.0kb downstream 3000   false Chr5: 23189903-23192902

Proteins

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Function

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4 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00903 Limonene and pinene degradation
00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis

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Expression

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Interactions

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Homology

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Stocks

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Other

10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016