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Gene : CDKC2 A. thaliana

Gene ID  ? AT5G64960
Brief Description  cyclin dependent kinase group C2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? cyclin dependent kinase group C2 (CDKC2); FUNCTIONS IN: kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, nuclear body, nucleus, microtubule, spliceosomal complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase C;1 (TAIR:AT5G10270.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes CDKC;2, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. Co-localizes with spliceosomal components in a manner dependent on the transcriptional status of the cells and on CDKC2-kinase activity. Expression of CDKC2 modifies the location of spliceosomal components.  Source: TAIR, Jun 30, 2015.
Name  ? cyclin dependent kinase group C2
  • synonyms:
  • CDKC;2,
  • Cyclin-dependent kinase C;2

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
The function and metabolism of CDKC2 is reported. 18208522
cdkc;2 specifically reduces transcription of COOLAIR antisense transcripts, which indirectly up-regulates FLC expression through disruption of a COOLAIR-mediated repression mechanism. 24799695

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G64960 0.5kb upstream 0.5kb upstream 4122   true Chr5: 25954874-25958995
AT5G64960 0.5kb upstream 0.5kb upstream 500   false Chr5: 25954874-25955373
AT5G64960 0.5kb downstream 0.5kb downstream 4122   true Chr5: 25955374-25959495
AT5G64960 0.5kb downstream 0.5kb downstream 500   false Chr5: 25958996-25959495
AT5G64960 1.0kb upstream 1.0kb upstream 4622   true Chr5: 25954374-25958995
AT5G64960 1.0kb upstream 1.0kb upstream 1000   false Chr5: 25954374-25955373
AT5G64960 1.0kb downstream 1.0kb downstream 4622   true Chr5: 25955374-25959995
AT5G64960 1.0kb downstream 1.0kb downstream 1000   false Chr5: 25958996-25959995
AT5G64960 3.0kb upstream 3.0kb upstream 6622   true Chr5: 25952374-25958995
AT5G64960 3.0kb upstream 3.0kb upstream 3000   false Chr5: 25952374-25955373
AT5G64960 3.0kb downstream 3.0kb downstream 6622   true Chr5: 25955374-25961995
AT5G64960 3.0kb downstream 3.0kb downstream 3000   false Chr5: 25958996-25961995

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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139