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Gene : AT5G65260 A. thaliana

Gene ID  ? AT5G65260
Brief Description  RNA-binding (RRM/RBD/RNP motifs) family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G10350.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G65260 0.5kb upstream 0.5kb upstream 3345   true Chr5: 26080222-26083566
AT5G65260 0.5kb upstream 0.5kb upstream 500   false Chr5: 26083067-26083566
AT5G65260 0.5kb downstream 0.5kb downstream 3345   true Chr5: 26079722-26083066
AT5G65260 0.5kb downstream 0.5kb downstream 500   false Chr5: 26079722-26080221
AT5G65260 1.0kb upstream 1.0kb upstream 3845   true Chr5: 26080222-26084066
AT5G65260 1.0kb upstream 1.0kb upstream 1000   false Chr5: 26083067-26084066
AT5G65260 1.0kb downstream 1.0kb downstream 3845   true Chr5: 26079222-26083066
AT5G65260 1.0kb downstream 1.0kb downstream 1000   false Chr5: 26079222-26080221
AT5G65260 3.0kb upstream 3.0kb upstream 5845   true Chr5: 26080222-26086066
AT5G65260 3.0kb upstream 3.0kb upstream 3000   false Chr5: 26083067-26086066
AT5G65260 3.0kb downstream 3.0kb downstream 5845   true Chr5: 26077222-26083066
AT5G65260 3.0kb downstream 3.0kb downstream 3000   false Chr5: 26077222-26080221


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1 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway

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Array Expression

RNA-seq Expression


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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139